Phylogenetic analysis of bovine respiratory syncytial viruses from recent outbreaks in feedlot and dairy cattle herds
Identifieur interne : 001422 ( Main/Exploration ); précédent : 001421; suivant : 001423Phylogenetic analysis of bovine respiratory syncytial viruses from recent outbreaks in feedlot and dairy cattle herds
Auteurs : Mehdi R. M. Bidokhti [Suède] ; Madeleine Tr Vén [Suède] ; Anna Ohlson [Suède] ; Behdad Zarnegar [Suède] ; Claudia Baule [Suède] ; Sándor Belák [Suède] ; Stefan Alenius [Suède] ; Lihong Liu [Suède]Source :
- Archives of Virology [ 0304-8608 ] ; 2012-04-01.
Abstract
Abstract: Bovine respiratory syncytial virus (BRSV) is one of the major causes of bovine respiratory disease worldwide. In order to study the molecular epidemiology of the virus, samples from 30 BRSV outbreaks in cattle herds located in different parts of Sweden were collected from 2007 to 2011. The samples were analyzed by PCR, and the glycoprotein (G) gene was sequenced. BRSV was detected in outbreaks of respiratory disease in both dairy and feedlot herds most often during the winter period but also during the summer months (May to August). This indicates that circulation of the virus between herds occurs throughout the year. Comparative sequence analysis revealed a high degree (more than 94.5%) of sequence identity among the collected strains. Phylogenetic analysis showed that 29 out of the 30 strains formed a unique clade. Identical sequences found in herds sampled within a few months’ time suggested that these herds were part of a common transmission chain. One strain from a single outbreak in a herd in southern Sweden clustered with Danish strains and showed a distant relationship to the rest of the Swedish strains. Further studies are highly warranted to clarify the inter-herd transmission routes of BRSV. Such knowledge is essential for the control of the spread of this virus between herds, regions and even countries.
Url:
DOI: 10.1007/s00705-011-1209-3
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Istex, to step Corpus: 000251
- to stream Istex, to step Curation: 000218
- to stream Istex, to step Checkpoint: 000082
- to stream Main, to step Merge: 001424
- to stream Main, to step Curation: 001422
Le document en format XML
<record><TEI wicri:istexFullTextTei="biblStruct"><teiHeader><fileDesc><titleStmt><title xml:lang="en">Phylogenetic analysis of bovine respiratory syncytial viruses from recent outbreaks in feedlot and dairy cattle herds</title><author><name sortKey="Bidokhti, Mehdi R M" sort="Bidokhti, Mehdi R M" uniqKey="Bidokhti M" first="Mehdi R. M." last="Bidokhti">Mehdi R. M. Bidokhti</name></author><author><name sortKey="Tr Ven, Madeleine" sort="Tr Ven, Madeleine" uniqKey="Tr Ven M" first="Madeleine" last="Tr Vén">Madeleine Tr Vén</name></author><author><name sortKey="Ohlson, Anna" sort="Ohlson, Anna" uniqKey="Ohlson A" first="Anna" last="Ohlson">Anna Ohlson</name></author><author><name sortKey="Zarnegar, Behdad" sort="Zarnegar, Behdad" uniqKey="Zarnegar B" first="Behdad" last="Zarnegar">Behdad Zarnegar</name></author><author><name sortKey="Baule, Claudia" sort="Baule, Claudia" uniqKey="Baule C" first="Claudia" last="Baule">Claudia Baule</name></author><author><name sortKey="Belak, Sandor" sort="Belak, Sandor" uniqKey="Belak S" first="Sándor" last="Belák">Sándor Belák</name></author><author><name sortKey="Alenius, Stefan" sort="Alenius, Stefan" uniqKey="Alenius S" first="Stefan" last="Alenius">Stefan Alenius</name></author><author><name sortKey="Liu, Lihong" sort="Liu, Lihong" uniqKey="Liu L" first="Lihong" last="Liu">Lihong Liu</name></author></titleStmt><publicationStmt><idno type="wicri:source">ISTEX</idno><idno type="RBID">ISTEX:33B56F9D3E8CFF97191A3959C14B15CFB3D4A9A5</idno><date when="2011" year="2011">2011</date><idno type="doi">10.1007/s00705-011-1209-3</idno><idno type="url">https://api.istex.fr/ark:/67375/VQC-ZP1F2LKQ-R/fulltext.pdf</idno><idno type="wicri:Area/Istex/Corpus">000251</idno><idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Corpus" wicri:corpus="ISTEX">000251</idno><idno type="wicri:Area/Istex/Curation">000218</idno><idno type="wicri:Area/Istex/Checkpoint">000082</idno><idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Checkpoint">000082</idno><idno type="wicri:doubleKey">0304-8608:2011:Bidokhti M:phylogenetic:analysis:of</idno><idno type="wicri:Area/Main/Merge">001424</idno><idno type="wicri:Area/Main/Curation">001422</idno><idno type="wicri:Area/Main/Exploration">001422</idno></publicationStmt><sourceDesc><biblStruct><analytic><title level="a" type="main" xml:lang="en">Phylogenetic analysis of bovine respiratory syncytial viruses from recent outbreaks in feedlot and dairy cattle herds</title><author><name sortKey="Bidokhti, Mehdi R M" sort="Bidokhti, Mehdi R M" uniqKey="Bidokhti M" first="Mehdi R. M." last="Bidokhti">Mehdi R. M. Bidokhti</name><affiliation wicri:level="1"><country xml:lang="fr">Suède</country><wicri:regionArea>Division of Ruminant Medicine and Veterinary Epidemiology, Department of Clinical Science, Swedish University of Agricultural Sciences, Box 7019, 750 07, Uppsala</wicri:regionArea><wicri:noRegion>Uppsala</wicri:noRegion></affiliation><affiliation wicri:level="1"><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Virology, Immunobiology and Parasitology (VIP), National Veterinary Institute (SVA), 751 89, Uppsala</wicri:regionArea><wicri:noRegion>Uppsala</wicri:noRegion></affiliation></author><author><name sortKey="Tr Ven, Madeleine" sort="Tr Ven, Madeleine" uniqKey="Tr Ven M" first="Madeleine" last="Tr Vén">Madeleine Tr Vén</name><affiliation wicri:level="1"><country xml:lang="fr">Suède</country><wicri:regionArea>Division of Ruminant Medicine and Veterinary Epidemiology, Department of Clinical Science, Swedish University of Agricultural Sciences, Box 7019, 750 07, Uppsala</wicri:regionArea><wicri:noRegion>Uppsala</wicri:noRegion></affiliation></author><author><name sortKey="Ohlson, Anna" sort="Ohlson, Anna" uniqKey="Ohlson A" first="Anna" last="Ohlson">Anna Ohlson</name><affiliation wicri:level="1"><country xml:lang="fr">Suède</country><wicri:regionArea>Division of Ruminant Medicine and Veterinary Epidemiology, Department of Clinical Science, Swedish University of Agricultural Sciences, Box 7019, 750 07, Uppsala</wicri:regionArea><wicri:noRegion>Uppsala</wicri:noRegion></affiliation></author><author><name sortKey="Zarnegar, Behdad" sort="Zarnegar, Behdad" uniqKey="Zarnegar B" first="Behdad" last="Zarnegar">Behdad Zarnegar</name><affiliation wicri:level="1"><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Virology, Immunobiology and Parasitology (VIP), National Veterinary Institute (SVA), 751 89, Uppsala</wicri:regionArea><wicri:noRegion>Uppsala</wicri:noRegion></affiliation></author><author><name sortKey="Baule, Claudia" sort="Baule, Claudia" uniqKey="Baule C" first="Claudia" last="Baule">Claudia Baule</name><affiliation wicri:level="1"><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Virology, Immunobiology and Parasitology (VIP), National Veterinary Institute (SVA), 751 89, Uppsala</wicri:regionArea><wicri:noRegion>Uppsala</wicri:noRegion></affiliation></author><author><name sortKey="Belak, Sandor" sort="Belak, Sandor" uniqKey="Belak S" first="Sándor" last="Belák">Sándor Belák</name><affiliation wicri:level="1"><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Virology, Immunobiology and Parasitology (VIP), National Veterinary Institute (SVA), 751 89, Uppsala</wicri:regionArea><wicri:noRegion>Uppsala</wicri:noRegion></affiliation><affiliation wicri:level="1"><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, 751 89, Uppsala</wicri:regionArea><wicri:noRegion>Uppsala</wicri:noRegion></affiliation></author><author><name sortKey="Alenius, Stefan" sort="Alenius, Stefan" uniqKey="Alenius S" first="Stefan" last="Alenius">Stefan Alenius</name><affiliation wicri:level="1"><country xml:lang="fr">Suède</country><wicri:regionArea>Division of Ruminant Medicine and Veterinary Epidemiology, Department of Clinical Science, Swedish University of Agricultural Sciences, Box 7019, 750 07, Uppsala</wicri:regionArea><wicri:noRegion>Uppsala</wicri:noRegion></affiliation></author><author><name sortKey="Liu, Lihong" sort="Liu, Lihong" uniqKey="Liu L" first="Lihong" last="Liu">Lihong Liu</name><affiliation wicri:level="1"><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Virology, Immunobiology and Parasitology (VIP), National Veterinary Institute (SVA), 751 89, Uppsala</wicri:regionArea><wicri:noRegion>Uppsala</wicri:noRegion></affiliation><affiliation wicri:level="1"><country wicri:rule="url">Suède</country></affiliation></author></analytic><monogr></monogr><series><title level="j">Archives of Virology</title><title level="j" type="sub">Official Journal of the Virology Division of the International Union of Microbiological Societies</title><title level="j" type="abbrev">Arch Virol</title><idno type="ISSN">0304-8608</idno><idno type="eISSN">1432-8798</idno><imprint><publisher>Springer Vienna</publisher><pubPlace>Vienna</pubPlace><date type="published" when="2012-04-01">2012-04-01</date><biblScope unit="volume">157</biblScope><biblScope unit="issue">4</biblScope><biblScope unit="page" from="601">601</biblScope><biblScope unit="page" to="607">607</biblScope></imprint><idno type="ISSN">0304-8608</idno></series></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0304-8608</idno></seriesStmt></fileDesc><profileDesc><textClass></textClass><langUsage><language ident="en">en</language></langUsage></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Abstract: Bovine respiratory syncytial virus (BRSV) is one of the major causes of bovine respiratory disease worldwide. In order to study the molecular epidemiology of the virus, samples from 30 BRSV outbreaks in cattle herds located in different parts of Sweden were collected from 2007 to 2011. The samples were analyzed by PCR, and the glycoprotein (G) gene was sequenced. BRSV was detected in outbreaks of respiratory disease in both dairy and feedlot herds most often during the winter period but also during the summer months (May to August). This indicates that circulation of the virus between herds occurs throughout the year. Comparative sequence analysis revealed a high degree (more than 94.5%) of sequence identity among the collected strains. Phylogenetic analysis showed that 29 out of the 30 strains formed a unique clade. Identical sequences found in herds sampled within a few months’ time suggested that these herds were part of a common transmission chain. One strain from a single outbreak in a herd in southern Sweden clustered with Danish strains and showed a distant relationship to the rest of the Swedish strains. Further studies are highly warranted to clarify the inter-herd transmission routes of BRSV. Such knowledge is essential for the control of the spread of this virus between herds, regions and even countries.</div></front></TEI><affiliations><list><country><li>Suède</li></country></list><tree><country name="Suède"><noRegion><name sortKey="Bidokhti, Mehdi R M" sort="Bidokhti, Mehdi R M" uniqKey="Bidokhti M" first="Mehdi R. M." last="Bidokhti">Mehdi R. M. Bidokhti</name></noRegion><name sortKey="Alenius, Stefan" sort="Alenius, Stefan" uniqKey="Alenius S" first="Stefan" last="Alenius">Stefan Alenius</name><name sortKey="Baule, Claudia" sort="Baule, Claudia" uniqKey="Baule C" first="Claudia" last="Baule">Claudia Baule</name><name sortKey="Belak, Sandor" sort="Belak, Sandor" uniqKey="Belak S" first="Sándor" last="Belák">Sándor Belák</name><name sortKey="Belak, Sandor" sort="Belak, Sandor" uniqKey="Belak S" first="Sándor" last="Belák">Sándor Belák</name><name sortKey="Bidokhti, Mehdi R M" sort="Bidokhti, Mehdi R M" uniqKey="Bidokhti M" first="Mehdi R. M." last="Bidokhti">Mehdi R. M. Bidokhti</name><name sortKey="Liu, Lihong" sort="Liu, Lihong" uniqKey="Liu L" first="Lihong" last="Liu">Lihong Liu</name><name sortKey="Liu, Lihong" sort="Liu, Lihong" uniqKey="Liu L" first="Lihong" last="Liu">Lihong Liu</name><name sortKey="Ohlson, Anna" sort="Ohlson, Anna" uniqKey="Ohlson A" first="Anna" last="Ohlson">Anna Ohlson</name><name sortKey="Tr Ven, Madeleine" sort="Tr Ven, Madeleine" uniqKey="Tr Ven M" first="Madeleine" last="Tr Vén">Madeleine Tr Vén</name><name sortKey="Zarnegar, Behdad" sort="Zarnegar, Behdad" uniqKey="Zarnegar B" first="Behdad" last="Zarnegar">Behdad Zarnegar</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Sante/explor/CovidV2/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001422 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001422 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Sante
|area= CovidV2
|flux= Main
|étape= Exploration
|type= RBID
|clé= ISTEX:33B56F9D3E8CFF97191A3959C14B15CFB3D4A9A5
|texte= Phylogenetic analysis of bovine respiratory syncytial viruses from recent outbreaks in feedlot and dairy cattle herds
}}
| This area was generated with Dilib version V0.6.33. |  |